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The Kelley Lab attends SMBE 2023 in Ferrara, Italy

The Kelley Lab attends SMBE 2023 in Ferrara, Italy

The Kelley Lab recently attended the Society for Molecular Biology and Evolution (SMBE) 2023 conference in Ferrara, Italy.

Joanna gave an invited symposium talk on recent updates from the sulfide-adapted fish project, and presented on the 2022-2023 SMBE Virtual Lab Meeting Training Program.

Rishi gave a talk on supergenes in African Monarch butterflies, and Ellie, Kara, Blair, and incoming post-doc Sam gave posters highlighting numerous ongoing projects in the lab!

Joanna presents at SMBE 2023.
Joanna presenting on sulfide adapted fish.
Joanna presents at SMBE 2023.
Joanna presenting on the SMBE Virtual Lab Meeting Training Program.
Rishi presents at SMBE 2023.
Rishi presenting on supergenes in the City Theater.
Sam presents at SMBE 2023.
Sam presenting a poster on heritable adaptive plasticity.
Ellie presents at SMBE 2023.
Ellie presenting a poster on population genomics of North American brown bears.
Kara presents at SMBE 2023.
Kara presenting a poster on convergent evolution in extremophile fish.
Blair presents at SMBE 2023.
Blair presenting a poster on regulatory sequences in bears.
View from the stage in the City Theater.
View from the stage in the City Theater.
Gala dinner in the park.
Gala dinner in the park.
Coffee break!
Coffee break!
Lab dinner with the lab, collaborators, and friends!
Lab dinner with the lab, collaborators, and friends!
Poster session in the San Paolo cloisters.
Poster session in the San Paolo cloisters.
Celebrating the life and legacy of Nei.
Celebrating the life and legacy of Nei.

 

Joanna presents to UC Berkeley, PopGen Vienna, and Museo Nacional de Ciencias Naturales!

Joanna presents to UC Berkeley, PopGen Vienna, and Museo Nacional de Ciencias Naturales!

Joanna has had a busy year presenting the lab’s latest research through numerous invited talks! These include talks at Museo Nacional de Ciencias Naturales in Spain, PopGen Vienna in Austria, and UC Berkeley in California.

Videos of three of these presentations can be found below and on our new Presentations website page!

https://www.youtube.com/watch?v=lgesv6aAFvA

Rishi presents at the USPA postdoc symposium at UCSC

Rishi presents at the USPA postdoc symposium at UCSC

On June 6th, the UC Santa Cruz Postdocs Association (USPA) held their annual symposium at the Seymour Marine Discovery Center. The event showcased the breadth of work being carried out by postdocs and graduate students across the university spanning physics, chemistry, and biology. In addition to a number of talks from UCSC postdocs, three invited speakers presented at this year’s symposium, covering a number of different fields including entrepreneurship, cosmology, and evolution.

Rishi gave a short presentation titled “Evolutionary dynamics of a complex supergene in the African monarch butterfly”. This talk started by outlining the key differences between using variation in nucleotides (e.g. A or T) to study evolutionary patterns compared to structural variation (including inversions, deletions, and duplications). He then outlined his work in the African monarch (Danaus chrysippus) system showing how long-read sequencing allows us to study complex structural variants to better understand how structural variation arises and is maintained through time.

The lab publishes a unique transcriptomic dataset for hibernating bears.

The lab publishes a unique transcriptomic dataset for hibernating bears.

The lab recently published a one-of-a-kind dataset of gene expression from multiple tissues of two hibernating brown bears at BMC Genomic Data.

Congrats to all coauthors!

Abstract

Objectives. Complex physiological adaptations often involve the coordination of molecular responses across multiple tissues. Establishing transcriptomic resources for non-traditional model organisms with phenotypes of interest can provide a foundation for understanding the genomic basis of these phenotypes, and the degree to which these resemble, or contrast, those of traditional model organisms. Here, we present a one-of-a-kind gene expression dataset generated from multiple tissues of two hibernating brown bears (Ursus arctos).

Data description. This dataset is comprised of 26 samples collected from 13 tissues of two hibernating brown bears. These samples were collected opportunistically and are typically not possible to attain, resulting in a highly unique and valuable gene expression dataset. In combination with previously published datasets, this new transcriptomic resource will facilitate detailed investigation of hibernation physiology in bears, and the potential to translate aspects of this biology to treat human disease.

Link to the article at BMC Genomic Data.

Blair co-authors paper on prairie rattlesnake venom variation.

Blair co-authors paper on prairie rattlesnake venom variation.

Blair is a co-author on a recent study of venom compositional variation in the Prairie Rattlesnake (Crotalus viridis) at BMC Biology.

Abstract

Background. Snake venoms are trophic adaptations that represent an ideal model to examine the evolutionary factors that shape polymorphic traits under strong natural selection. Venom compositional variation is substantial within and among venomous snake species. However, the forces shaping this phenotypic complexity, as well as the potential integrated roles of biotic and abiotic factors, have received little attention. Here, we investigate geographic variation in venom composition in a wide-ranging rattlesnake (Crotalus viridis viridis) and contextualize this variation by investigating dietary, phylogenetic, and environmental variables that covary with venom.

Results. Using shotgun proteomics, venom biochemical profiling, and lethality assays, we identify 2 distinct divergent phenotypes that characterize major axes of venom variation in this species: a myotoxin-rich phenotype and a snake venom metalloprotease (SVMP)-rich phenotype. We find that dietary availability and temperature-related abiotic factors are correlated with geographic trends in venom composition.

Conclusions. Our findings highlight the potential for snake venoms to vary extensively within species, for this variation to be driven by biotic and abiotic factors, and for the importance of integrating biotic and abiotic variation for understanding complex trait evolution. Links between venom variation and variation in biotic and abiotic factors indicate that venom variation likely results from substantial geographic variation in selection regimes that determine the efficacy of venom phenotypes across populations and snake species. Our results highlight the cascading influence of abiotic factors on biotic factors that ultimately shape venom phenotype, providing evidence for a central role of local selection as a key driver of venom variation.

Link to the article at BMC Biology.

Tait publishes research on snow crabs and ocean acidification

Tait publishes research on snow crabs and ocean acidification

Tait recently published a manuscript at Marine Biology that examines exoskeletal integrity of Alaskan snow crabs in response to ocean acidification. Tait conducted this work as an undergraduate at The College of New Jersey.

Congratulations Tait!

Abstract

Structural and mechanical properties of the decapod exoskeleton affect foraging, defense, and locomotion. Ocean acidification (OA) poses a threat to marine biomes and their inhabitants, particularly calcifying organisms. Vulnerability of the snow crab, Chionecetes opilio, a commercially important, high-latitude species, to OA has not been explored. Although all oceans are experiencing acidification, abiotic factors in high-latitude areas increase the rate of acidification. We examined the effect of long-term (2 year) exposure to decreased seawater pH (7.8 and 7.5, PCO2 ~ 760 and 1550 µatm, respectively) on exoskeletal properties in post-terminal-molt female C. opilio. Since the effects of OA vary among body regions in decapods, exoskeletal properties (microhardness, thickness, and elemental composition) were measured in five body regions: the carapace, both claws, and both third walking legs. Overall, adult C. opilio exoskeletons were robust to OA in all body regions. Decreased pH had no effect on microhardness or thickness of the exoskeleton, despite a slight (~ 6%) reduction in calcium content in crabs held at pH 7.5. In contrast, exoskeletal properties varied dramatically among body regions regardless of pH. The exoskeleton of the claws was harder, thicker, and contained more calcium but less magnesium than that of other body regions. Exoskeleton of the legs was thinner than that of other body regions and contained significantly greater magnesium concentrations (~ 2.5 times higher than the claws). Maintenance of exoskeletal properties after long-term OA exposure, at least down to pH 7.5, in adult C. opilio suggests that wild populations may tolerate future ocean pH conditions.

Link to article at Marine Biology.

Kara and Tait present research at EVO-WIBO 2023, Kara wins Best Poster!

Kara and Tait present research at EVO-WIBO 2023, Kara wins Best Poster!

This weekend, Kara and Tait represented the Kelley Lab at the EVO-WIBO 2023 meeting for evolutionary biologists of the Pacific Northwest. They each presented excellent posters on their current research – Kara discussed selection and convergent evolution in extremophile fish, while Tait presented work on gene expression in Chinook salmon. Nice job Kara and Tait!

And an extra special congratulations to Kara for winning Best Poster at the conference!

Tait at EVO-WIBO 2023
Tait presenting her poster at EVO-WIBO 2023
Abby receives WSU scholarship for undergraduate research!

Abby receives WSU scholarship for undergraduate research!

Abby was awarded the Ellen Hauge Ableson Endowed Scholarship in Sciences from the WSU College of Arts and Sciences! This scholarship will support Abby’s undergraduate research project in which she is studying sex-specific patterns of gene expression in hibernating bears.

Congratulations Abby!


Image courtesy of the WSU Bear Center.

Grace receives award for excellent undergraduate research at WSU SURCA!

Grace receives award for excellent undergraduate research at WSU SURCA!

Grace presented her research on sex-biased dispersal and gene flow of North American brown bears at WSU’s annual Showcase for Undergraduate Research and Creative Activities (SURCA). Grace put together an amazing great poster and was awarded the Gray Award in the Organismal, Population, Ecological, and Evolutionary Biology category!

Congratulations Grace!

Grace with SURCA poster

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